Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs6598949 chr1:26570316 G/C 1.68E-5 514 6.8 21.37 22.1 KM Plot
HNSC rs6598950 chr1:26587038 A/T 1.75E-5 515 6.8 20.58 22.1 KM Plot
HNSC rs6657244 chr1:35993927 C/T 8.71E-6 507 21.37 26.37 3.37 KM Plot
HNSC rs6666245 chr1:26562899 C/T 1.81E-5 513 6.8 21.57 22.1 KM Plot
HNSC rs6669400 chr1:26571977 G/A 1.68E-5 514 6.8 21.37 22.1 KM Plot
HNSC rs6669472 chr1:248528837 C/A 4.22E-5 515 22.2 22.67 13.43 KM Plot
HNSC rs6671974 chr1:36162047 G/A 4.42E-14 510 21.1 30.92 3.02 KM Plot
HNSC rs6682101 chr1:26566685 A/G 1.68E-5 514 6.8 21.37 22.1 KM Plot
HNSC rs6684802 chr1:16449680 C/T 3.84E-7 515 21.78 21.5 4.58 KM Plot
HNSC rs6686632 chr1:52583611 C/T 2.52E-5 515 9.88 21.43 21.8 KM Plot
HNSC rs6689224 chr1:26589373 A/G 1.75E-5 515 6.8 20.58 22.1 KM Plot
HNSC rs6744199 chr2:99893775 T/C 1.51E-8 513 7 20.8 22.07 KM Plot
HNSC rs6745645 chr2:99921486 G/A 3.74E-6 510 7.17 20.48 22.5 KM Plot
HNSC rs6747601 chr2:99840270 A/G 3.97E-8 513 6.83 19.3 22.27 KM Plot
HNSC rs6749029 chr2:99904990 T/C 9.2E-7 513 7 20.77 22.27 KM Plot